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PAPERS

33. Baleeva NS, Myannik KA, Yampolsky IV, Mishin AS, Eur. J. Org. Chem. 2015, 26, 5716–5721.
Bioinspired fluorescent dyes based on conformationally locked chromophore of fluorescent protein Kaede.

32. Walker CL, Lukyanov KA, Yampolsky IV, Mishin AS, Duraj-Thatte AM, Bahareh Azizi, Tolbert LM, Solntsev KM, Current Opin. Chem. Biol. 2015, 27, 64-74.
Fluorescence imaging using synthetic GFP chromophores.

31. Purtov KV, Petushkov VN, Baranov MS, Mineev KS, Rodionova NS, Kaskova ZM, Tsarkova AS, Petunin AI, Bondar VS, Rodicheva EK, Medvedeva SE, Oba Yuichi, Oba Yomiko, Arseniev AS, Lukyanov S, Gitelson JI, Yampolsky IV, Angewandte Chemie International Edition, 2015, 54, 8124–8128.
The chemical basis of fungal bioluminescence.

30. Dubinnyi MA, Kaskova ZM, Rodionova NS, Baranov MS, Gorokhovatsky AY, Kotlobay A, Solntsev KM, Tsarkova AS, Petushkov VN, Yampolsky IV, Angewandte Chemie International Edition, 2015, 54, 7065–7067.
Novel mechanism of bioluminescence: oxidative decarboxylation of Fridericia luciferin.

29. Tsarkova AS, Dubinnyi MA, Baranov MS, Petushkov VN, Rodionova NS, Zagudaylova MB, Yampolsky IV, Mendeleev Commun. 2015, 25, 99-100.
Total synthesis of AsLn2 – a luciferin analogue from the Siberian bioluminescent earthworm Fridericia heliota.

28. Dubinnyi MA, Tsarkova AS, Petushkov VN, Kaskova ZM, Rodionova NS, Kovalchuk SI, Ziganshin RH, Baranov MS, Mineev KS, Yampolsky IV, Chem. Eur. J. 2015, 21, 3942–3947.
Novel Peptide Chemistry in Terrestrial Animals: Natural Luciferin Analogues from the Bioluminescent Earthworm Fridericia heliota.

27. Baranov MS, Solntsev KM, Baleeva NS, Mishin AS, Lukyanov KA, Yampolsky IV, Chem. Eur. J. 2014, 41, 13234–13241.
Red-shifted fluorescent aminated derivatives of conformationally locked GFP chromophore.

26. Petushkov VN, Dubinnyi MA, Tsarkova AS, Rodionova NS, Baranov MS, Kublitski VS, Shimomura O., Yampolsky IV, Angewandte Chemie International Edition, 2014, 53, 5566–5568.
A novel type of luciferin from Siberian luminous earthworm Fridericia heliota: structure elucidation by spectral studies and total synthesis.

25. Baranov MS, Fedyakina IT, Shchelkanov MY, Yampolsky IV, Tetrahedron,, 2014, 70, 3714-3719.
Ring-expanding rearrangement of 2-acyl-5-arylidene-3,5-dihydro-4H-imidazol-4-ones in synthesis of flutimide analogs

24. Petushkov VN, Dubinnyi MA, Rodionova NS, Nadezhdin KD, Marques SM, J. C.G. Esteves da Silva, Shimomura O., Yampolsky IV, Tetrahedron Letters, 2014, 55, 463-465.
AsLn2, a luciferin-related modified tripeptide from the bioluminescent earthworm Fridericia heliota

23. Petushkov VN, Tsarkova AS, Dubinnyi MA, Rodionova NS, Marques SM, J. C.G. Esteves da Silva, Shimomura O., Yampolsky IV, Tetrahedron Letters, 2014, 55, 460-462.
CompX, a luciferin-related tyrosine derivative from the bioluminescent earthworm Fridericia heliota. Structure elucidation and total synthesis

22. Pletnev VZ, Pletneva NV, Lukyanov KA, Souslova EA, Fradkov AF, Chudakov DM, Chepurnykh T, Yampolsky IV, Wlodawer A, Dauter Z, Pletnev S, Acta Cryst. 2013, D69, 1850-1860.
Structure of the red fluorescent protein from a lancelet (Branchiostoma lanceolatum): a novel GYG chromophore covalently bound to a nearby tyrosine

21. Frizler M, Yampolsky IV, Baranov MS, Stirnberga M, Gutschow M, Org. Biomol. Chem. 2013, 11, 5913.
Chemical introduction of the green fluorescence: imaging of cysteine cathepsins by an irreversibly locked GFP fluorophore

20. Baranov MS, Solntsev KM, Lukyanov KA, Yampolsky IV, Chem. Commun. 2013, 49 (51), 5778-5780.
Synthetic approach to GFP chromophore analogs from 3-azidocinnamates. Role of methyl rotors on the chromophore photophysics

19. Baranov MS, Lukyanov KA, Yampolsky IV, Russ. J. Bioorg. Chem. 2013, 3, 223-244.
Synthesis of the chromophores of fluorescent proteins and their analogs

18. Baranov MS, Lukyanov KA, Ivashkin PE, Yampolsky IV, Synth. Commun. 2013, 43, 2337-2342.
An efficient synthetic approach to fluorescent oxazole-4-carboxylate derivatives

17. Baranov MS, Yampolsky IV, Tetrahedron Lett. 2013, 54, 628-629.
Novel condensations of nitroacetic esters with aromatic aldehydes leading to 5-hydroxy-1,2-oxazin-6-ones

16. Baranov MS, Yampolsky IV, Chemistry of Heterocyclic Compounds. 2012, 48, 1108-1110.
Unusual transformations of anthranilic acid imidazolides

15. Sarkisyan KS, Yampolsky IV, Solntsev KM, Lukyanov SA, Lukyanov KA, Mishin AS, Scientific Reports. 2012, 2, Art. ٺ 608.
Tryptophan-based chromophore in fluorescent proteins can be anionic

14. Baranov MS, Lukyanov KA, Borissova AO, Shamir J, Kosenkov D, Slipchenko LV, Tolbert LM, Yampolsky IV, Solntsev KM, J. Am. Chem. Soc. 2012, 134, 6025-6032.
Conformationally locked chromophores as a model of excited state proton transfer in fluorescent proteins

13. Ivashkin PE, Lukyanov KA, Yampolsky IV, Russ. J. Bioorg. Chem. 2011, 37, 411-420.
Synthesis of Biosynthetic Precursors of Chromophores of Red Fluorescent Proteins

12. Ivashkin PE, Lukyanov KA, Lukyanov S, Yampolsky IV, J.Org. Chem. 2011, 76, 2782-2791.
A Synthetic GFP-like Chromophore Undergoes Base-Catalyzed Autoxidation into Acylimine Red Form

11. Ivashkin PE, Yampolsky IV, Lukyanov KA, Russ. J. Bioorg. Chem. 2009, 35, 652-669.
Synthesis and Properties of Chromophores of Fluorescent Proteins

10. Yampolsky IV, Balashova TA, Lukyanov KA, Biochemistry 2009, 48, 8077-8082.
Synthesis and Spectral and Chemical Properties of the Yellow Fluorescent Protein zFP538 Chromophore

9. Bogdanov AM, Mishin AS, Yampolsky IV, Belousov VV, Chudakov DM, Subach FV, Verkhusha VV, Lukyanov S, Lukyanov K, Nature Chem. Biol. 2009, 5, 459-461.
Green fluorescent proteins are light-induced electron donors

8. Yampolsky IV, Kislukhin AA, Amatov TT, Shcherbo D, Potapov VK, Lukyanov S, Lukyanov KA, Bioorg. Chem. 2008, 36, 96-104.
Synthesis and properties of the red chromophore of the green-to-red photoconvertible fluorescent protein Kaede and its analogs

7. Mishin AS, Subach FV, Yampolsky IV, King W, Lukyanov KA, Verkhusha VV, Biochemistry 2008, 47, 4666-4673.
The first mutant of the Aequorea victoria green fluorescent protein that forms a red chromophore

6. Evdokimov AG, Pokross ME, Egorov NS, Zaraisky AG, Yampolsky IV, Merzlyak EM, Shkoporov AN, Sander I, Lukyanov KA, Chudakov DM, EMBO Reports 2006, 7, 1006-1012.
Structural basis for the fast maturation of Arthropoda green fluorescent protein

5. Yampolsky IV, Remington SJ, Martynov VI, Potapov VK, Lukyanov S, Lukyanov KA, Biochemistry 2005, 44, 5788-5793.
Synthesis and properties of the chromophore of the asFP595 Chromoprotein from Anemonia sulcata

4. Bulina ME, Lukyanov KA, Yampolsky IV, Chudakov DM, Staroverov DB, Shcheglov AS, Gurskaya NG, Lukyanov S, J. Biol. Chem 2004, 279, 43367-43370.
New class of blue animal pigments based on Frizzled and Kringle protein domains

3. Pastukhov FV, Yampolsky IV, Bubnov YN, J. Organomet. Chem 2002, 657, 123-128.
Allylboration of functionalized isoquinolines

2. Bubnov YN, Klimkina EV, Zhun' IV, Pastukhov FV, Yampolsky IV, Pure Appl. Chem 2000, 72, 1641-1644.
Allylic boron and zinc derivatives in synthesis and transformations of nitrogen heterocycles

1. Bubnov YN, Pastukhov FV, Yampolsky IV, Ignatenko AV, Eur. J. Org. Chem. 2000, 1503-1505.
A convenient synthesis of 2,2-diallylated nitrogen heterocycles by allylboration of lactams

REVIEWS

4. Walker CL, Lukyanov KA, Yampolsky IV, Mishin AS, Duraj-Thatte AM, Bahareh Azizi, Tolbert LM, Solntsev KM, Current Opin. Chem. Biol. 2015, published online
Fluorescence imaging using synthetic GFP chromophores.

3. Baranov MS, Lukyanov KA, Yampolsky IV, Russ. J. Bioorg. Chem. 2013, 3, 223-244.
Synthesis of the chromophores of fluorescent proteins and their analogs

2. Ivashkin PE, Yampolsky IV, Lukyanov KA, Russ. J. Bioorg. Chem. 2009, 35, 652-669.
Synthesis and Properties of Chromophores of Fluorescent Proteins

1. Bubnov YN, Klimkina EV, Zhun' IV, Pastukhov FV, Yampolsky IV, Pure Appl. Chem 2000, 72, 1641-1644.
Allylic boron and zinc derivatives in synthesis and transformations of nitrogen heterocycles


COVER PICTURES AND FRONTISPIECES



Cover picture Frontispiece
Cover picture Cover picture

 

PATENT

2. Yampolsky IV, Lukyanov KA, Baranov MS, WO 2014031021 A1, 2014.
Boron-containing 5-arylidene-3,5-dihydro-4h-imidazol-4-ones

1. Migdal C, Stott PE, Ustynyuuk NA, Zaroubine DA, Yampolsky IV, RufanovKA, United States Patent 7,229,951, 2007.
Organo-imido molybdenum complexes as friction modifier additives for lubricant compositions

CONFERENCES

5. Yampolsky IV, Ivashkin PE, International Symposium on Advances in Synthetic and Medicinal Chemistry, St-Petersburg, Russia 2011, Book of abstracts, P189.
Syntheic GFP chromophore is readily air-oxidized to form DSRed-like acylimine

4.Yampolsky IV, Ovchinnikov readings, Moscow, Russia 2009, Book of abstracts, 280-281.
Synthesis and properties of the chromophores of fluorescent proteins

3. Yampolsky IV, Potapov VK, Lukyanov S, Lukyanov KA, International symposium ?dvances in Science for Drug Discovery? Moscow, Russia 2005, Book of abstracts, ?54.
Synthesis and properties of the chromophore of asFP595 chromoprotein from Anemonia sulcata

2. Pastoukhov FV, Yampolsky IV, Bubnov YN, School-conference for young scientists ?rganometallic Chemistry Towards the 21st Century? Moscow, Russia 1999, Program and abstracts, PY11.
Reductive a,a-diallylation of lactams and amides. Synthesis of unsaturated amines and 2,2-diallylated nitrogen heterocycles

1. Bubnov YN, Klimkina EV, Zhun?IV, Pastukhov FV, Yampolsky IV, Tenth international meeting on boron chemistry (IMEBORON-X), Durham, UK 1999, Programme and Abstracts, CB-10.
Allylboration of nitrogen heterocycles


BOOKS

1. Bubnov YN, Klimkina EV, Zhun?IV, Pastukhov FV, Yampolsky IV, In: Contemporary Boron Chemistry M. G. Davidson, A. K. Hughes, T. B. Marder and K. Wade (Eds), The Royal Society of Chemistry, Camdridge, 2000, 446-449. ISBN 0-85404-835-9.
Allylboration of Nitrogen Heterocycles

 

 

 

institute of Bioorganic Chemistry